Welcome to the IFTI-MIRAGE website

© 1997-2008 Institute for Transcriptional Informatics.
IFTI-MIRAGE LOGO MIRAGE (Molecular Informatics Resource for the Analysis of Gene Expression) is a web site dedicated to methodologies, tools, and technologies relating to gene expression information. MIRAGE is a web resource of the Institute for Transcriptional Informatics. Buttons in the lower frame of this page link to database and sequence analysis services available at IFTI. Database technologies underlying these services were facilitated in part by resources at the San Diego Supercomputer Center and the Pittsburgh Supercomputer Center . For information on bioinformatics products using IFTI materials, visit the Products page. For questions and comments regarding this web resource, send a message to IFTI .

DATA FILES

  • (TFD) ------> ooTFD sequence datasets at IFTI

    SOFTWARE

  • Dynamic | Promoterscan | Signalscan | Macdynamic/Macsignalscan | Matrix-search | Conscor | SSA | Logoaid | Consensus/Patser | Tfd2prosite | Pratt | Pftools | Profin

    TESTING

  • Tfsites/NCBI-Entrez | TFD Submissions | TF-Advisor

    LINKS


  • General Background
  • General Background 1 General Background 2 General Background 3 General Background 4 General Background 5
    General Background 6 General Background 7 General Background 8 General Background 9 General Backround 10

  • Gene Regulation Resources
  • Web dynamicplus WebSignalScan B subtilis Muscle Regulatory Networks Modelling
    Maize Worms Pacreatic Transcription Factors Kidneys Termination
    KDGED TRRD PAX Trevigen GRBase Histones
    Tfsearch IMD Matrix-search Basal Promoterscan Homeobox
    GXD NRR Interactive Fly GBF-Transfac Pol3scan
    Computational Recognition Literature GENET Promoter prediction Promoter Matrices HoxDB
    Recognition Code Drosophila Segmentation Mouse Atlas Chromatin Assembly FlyBase Gene Expression
    MPW TRADAT PLACE TFCD yeast GCN4 targets
    RegulonDb PatScan NF-Y ISB MIPS Yeast Transcription Factors
    E coli Sites Mammary Gland Development EGAD Mouse Gene Expression GeneTool
    MOD Gene Expression Patterns Transcription Factor Imaging SAGEmap BodyMap Yeast Genome Data Mining
    TargetFinder Yeast Regulatory Tools PromoterScan II RGSiteScan BDGP Expression Report
    NEXTDB Yeast Genome-Wide Expression mRNA Abundance SAGE Query DPInteract
    Tooth Gene Expression SCPD CPROMOTER FlyView ArrayDB
    PlantCARE Homeodomain Resource Maize Gene Expression TFBIND hvrBase
    Genexpress ASDB Yeast Rp promoters Promoter 2.0 Arabidopsis Gene Expression
    Yeast polII initiation complex Vitamin D receptor Stanford Yeast Cell Cycle Project ACUTS Microarray Publications
    GeneX MPR datasets RAD Pubgene Gene-chips.com
    Pronit TRES Cis-analyst Cister McPromoter


  • Domain Images
  • Leucine Zipper Folding Simulations Regulatory Protein Structures Dimers TFIIB C-Terminal Core Domain GCN4/DNA

    Note: These and other structures may be viewed by a 3D Java viewer at the IFTI-MIRAGE Structures page.


  • Signal Transduction
  • Protein Kinase Resource Plants Signal Transduction and Cancer Yeast Pathways
    Signal Transduction Publications SPAD MAPK signalling pathways PTP Research Center Wnt genes
    PhosphoBase PPFGDB PPDB CSNDB SENTRA
  • Laboratories
  • Schepartz Korach Chamberlin Timmers Jeang
    Harris Aasland/Stewart Hinnebusch McKnight Cochran
    Sippel Richmond Joyner Rudnicki Quinn
    Hegde Ziff Pikaard Ness Milbrandt
    Berk Wemmer Sarge Geert Morimoto
    Moore Costa Tjian Karin Vogt
    Kadonaga Laybourn Owen-Hughes Pazin Woychik



  • Documentation Resources

    The TFD documentation page contains general information about this database and recent changes. To be kept informed on developments and changes to this web site, please subscribe to the IFTI-MIRAGE mailing list by submitting your email address below.
    This site is best visited with a Java-enabled web browser. Please enable your browser to run Java, or download one (Netscape 3.0 or higher) which does.